cmake 3.16.5 Segmentation Violation

tedheadster · June 3, 2020, 5:51pm

I am getting a segmentation violation when running a recompiled
‘cmake’. I rebuilt with debugging symbols; here are the results:

/var/tmp/portage/dev-util/cmake-3.16.5/image/usr/bin # gdb ./cmake
GNU gdb (Gentoo 9.1 vanilla) 9.1
Copyright © 2020 Free Software Foundation, Inc.
…
Reading symbols from ./cmake…
(gdb) run --version
Starting program:
/var/tmp/portage/dev-util/cmake-3.16.5/image/usr/bin/cmake --version
[Thread debugging using libthread_db enabled]
Using host libthread_db library “/lib/libthread_db.so.1”.
cmake version 3.16.5

CMake suite maintained and supported by Kitware (kitware.com/cmake).

Program received signal SIGSEGV, Segmentation fault.
0xb7de7296 in uv_loop_close (loop=0x0) at
/usr/src/debug/dev-libs/libuv-1.35.0/libuv-1.35.0/src/uv-common.c:757
757 if (uv__has_active_reqs(loop))
(gdb) up
#1 0x0053fab4 in main (ac=, av=0xb09a60)
at /var/tmp/portage/dev-util/cmake-3.16.5/work/cmake-3.16.5/Source/cmakemain.cxx:706
706 uv_loop_close(uv_default_loop());
(gdb) up
Initial frame selected; you cannot go up.
(gdb)

Who can I work with to debug this?

Matthew

kyle.edwards · June 3, 2020, 6:04pm

We have released several CMake versions since 3.16.5. Please try 3.16.8 or 3.17.3 to see if the problem persists.

kyle.edwards · June 3, 2020, 6:09pm

What version of libuv do you have installed?

tedheadster · June 3, 2020, 6:17pm

I have version 1.35.0 of libuv.

Matthew

tedheadster · June 3, 2020, 6:22pm

I am using the Gentoo Linux distribution. They have four version of
cmake in development:3.17.3, 3.17.2, 3.16.5, and 3.13.5.

https://packages.gentoo.org/packages/dev-util/cmake

Their libuv is similar: 1.38.0-r1, 1.37.0, and 1.35.0.

https://packages.gentoo.org/packages/dev-libs/libuv

Do they need to patch them for a known bug?

Matthew

kyle.edwards · June 3, 2020, 6:31pm

Not that I know of, though it’s very strange that uv_default_loop() is returning NULL. 1.35.0 should be supported by CMake. Try 1.37.0 (and perhaps 1.38.0-r1) if you can.

tedheadster · June 3, 2020, 7:41pm

Kyle Edwards,
the problem persists with cmake 3.17.3 and libuv 1.37.0:

gdb cmake

GNU gdb (Gentoo 9.1 vanilla) 9.1
…
Reading symbols from cmake…
(gdb) run --version
Starting program: /var/tmp/portage/dev-util/cmake-3.17.3/image/usr/bin/cmake --version
[Thread debugging using libthread_db enabled]
Using host libthread_db library “/lib/libthread_db.so.1”.
cmake version 3.17.3

CMake suite maintained and supported by Kitware (kitware.com/cmake).

Program received signal SIGSEGV, Segmentation fault.
0xb7de7316 in uv_loop_close (loop=0x0) at /usr/src/debug/dev-libs/libuv-1.37.0/libuv-1.37.0/src/uv-common.c:768
768 if (uv__has_active_reqs(loop))
(gdb) bt
#0 0xb7de7316 in uv_loop_close (loop=0x0) at /usr/src/debug/dev-libs/libuv-1.37.0/libuv-1.37.0/src/uv-common.c:768
#1 0x0054e59f in main (ac=, av=0xb55b50)
at /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmakemain.cxx:709
(gdb) up
#1 0x0054e59f in main (ac=, av=0xb55b50)
at /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmakemain.cxx:709
709 uv_loop_close(uv_default_loop());
(gdb)

Matthew

tedheadster · June 3, 2020, 7:44pm

Here are the (lengthy) compiler arguments used:

readelf --string-dump=.GCC.command.line cmake | less

String dump of section ‘.GCC.command.line’:
[ 0] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3_build/Utilities
[ 4c] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Utilities
[ 92] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3_build/Source
[ db] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source
[ 11e] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/LexerParser
[ 16d] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/CTest
[ 1b6] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/CPack
[ 1ff] -D_GNU_SOURCE
[ 20d] -isystem
/var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Utilities/std
[ 25d] -isystem /usr/include/jsoncpp
[ 27b] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmakemain.cxx
[ 2c9] -march=pentium-m
[ 2da] -auxbase-strip CMakeFiles/cmake.dir/cmakemain.cxx.o
[ 30e] -ggdb
[ 314] -O2
[ 318] -Wno-deprecated-declarations
[ 335] -std=gnu++17
[ 342] -frecord-gcc-switches
[ 358] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmcmd.cxx
[ 3a2] -auxbase-strip CMakeFiles/cmake.dir/cmcmd.cxx.o
[ 3d2] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDependsFortran.cxx
pentiumm-laptop /var/tmp/portage/dev-util/cmake-3.17.3/image/usr/bin #
readelf --string-dump=.GCC.command.line cmake

String dump of section ‘.GCC.command.line’:
[ 0] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3_build/Utilities
[ 4c] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Utilities
[ 92] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3_build/Source
[ db] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source
[ 11e] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/LexerParser
[ 16d] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/CTest
[ 1b6] -I /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/CPack
[ 1ff] -D_GNU_SOURCE
[ 20d] -isystem
/var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Utilities/std
[ 25d] -isystem /usr/include/jsoncpp
[ 27b] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmakemain.cxx
[ 2c9] -march=pentium-m
[ 2da] -auxbase-strip CMakeFiles/cmake.dir/cmakemain.cxx.o
[ 30e] -ggdb
[ 314] -O2
[ 318] -Wno-deprecated-declarations
[ 335] -std=gnu++17
[ 342] -frecord-gcc-switches
[ 358] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmcmd.cxx
[ 3a2] -auxbase-strip CMakeFiles/cmake.dir/cmcmd.cxx.o
[ 3d2] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDependsFortran.cxx
[ 427] -auxbase-strip CMakeFiles/CMakeLib.dir/cmDependsFortran.cxx.o
[ 465] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDocumentation.cxx
[ 4b9] -auxbase-strip CMakeFiles/CMakeLib.dir/cmDocumentation.cxx.o
[ 4f6] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDocumentationFormatter.cxx
[ 553] -auxbase-strip
CMakeFiles/CMakeLib.dir/cmDocumentationFormatter.cxx.o
[ 599] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDocumentationSection.cxx
[ 5f4] -auxbase-strip CMakeFiles/CMakeLib.dir/cmDocumentationSection.cxx.o
[ 638] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmDynamicLoader.cxx
[ 68c] -auxbase-strip CMakeFiles/CMakeLib.dir/cmDynamicLoader.cxx.o
[ 6c9] -D CMake_STAT_HAS_ST_MTIM=1
[ 6e5] -D CMake_STAT_HAS_ST_MTIMESPEC=0
[ 706] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmFileTime.cxx
[ 755] -auxbase-strip CMakeFiles/CMakeLib.dir/cmFileTime.cxx.o
[ 78d] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmFortranParserImpl.cxx
[ 7e5] -auxbase-strip CMakeFiles/CMakeLib.dir/cmFortranParserImpl.cxx.o
[ 826] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmGeneratedFileStream.cxx
[ 880] -auxbase-strip CMakeFiles/CMakeLib.dir/cmGeneratedFileStream.cxx.o
[ 8c3] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmLocalGenerator.cxx
[ 918] -auxbase-strip CMakeFiles/CMakeLib.dir/cmLocalGenerator.cxx.o
[ 956] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmRulePlaceholderExpander.cxx
[ 9b4] -auxbase-strip
CMakeFiles/CMakeLib.dir/cmRulePlaceholderExpander.cxx.o
[ 9fb] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmMakefile.cxx
[ a4a] -auxbase-strip CMakeFiles/CMakeLib.dir/cmMakefile.cxx.o
[ a82] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmOutputConverter.cxx
[ ad8] -auxbase-strip CMakeFiles/CMakeLib.dir/cmOutputConverter.cxx.o
[ b17] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmNewLineStyle.cxx
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[ c80] -auxbase-strip CMakeFiles/CMakeLib.dir/cmQtAutoMocUic.cxx.o
[ cbc] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmQtAutoRcc.cxx
[ d0c] -auxbase-strip CMakeFiles/CMakeLib.dir/cmQtAutoRcc.cxx.o
[ d45] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmRST.cxx
[ d8f] -auxbase-strip CMakeFiles/CMakeLib.dir/cmRST.cxx.o
[ dc2] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmScriptGenerator.cxx
[ e18] -auxbase-strip CMakeFiles/CMakeLib.dir/cmScriptGenerator.cxx.o
[ e57] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmSourceFile.cxx
[ ea8] -auxbase-strip CMakeFiles/CMakeLib.dir/cmSourceFile.cxx.o
[ ee2] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmSourceFileLocation.cxx
[ f3b] -auxbase-strip CMakeFiles/CMakeLib.dir/cmSourceFileLocation.cxx.o
[ f7d] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmSourceGroup.cxx
[ fcf] -auxbase-strip CMakeFiles/CMakeLib.dir/cmSourceGroup.cxx.o
[ 100a] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmState.cxx
[ 1056] -auxbase-strip CMakeFiles/CMakeLib.dir/cmState.cxx.o
[ 108b] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmStateDirectory.cxx
[ 10e0] -auxbase-strip CMakeFiles/CMakeLib.dir/cmStateDirectory.cxx.o
[ 111e] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmStateSnapshot.cxx
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[ 12d3] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmTarget.cxx
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CMakeFiles/CMakeLib.dir/cmTargetPropertyComputer.cxx.o
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[ 1478] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmTestGenerator.cxx
[ 14cc] -auxbase-strip CMakeFiles/CMakeLib.dir/cmTestGenerator.cxx.o
[ 1509] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmUVProcessChain.cxx
[ 155e] -auxbase-strip CMakeFiles/CMakeLib.dir/cmUVProcessChain.cxx.o
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[ 15f0] -auxbase-strip CMakeFiles/CMakeLib.dir/cmVariableWatch.cxx.o
[ 162d] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmVersion.cxx
[ 167b] -auxbase-strip CMakeFiles/CMakeLib.dir/cmVersion.cxx.o
[ 16b2] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmWorkerPool.cxx
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[ 173d] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmWorkingDirectory.cxx
[ 1794] -auxbase-strip CMakeFiles/CMakeLib.dir/cmWorkingDirectory.cxx.o
[ 17d4] -D CMAKE_USE_WMAKE
[ 17e7] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmake.cxx
[ 1831] -auxbase-strip CMakeFiles/CMakeLib.dir/cmake.cxx.o
[ 1864] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmCommand.cxx
[ 18b2] -auxbase-strip CMakeFiles/CMakeLib.dir/cmCommand.cxx.o
[ 18e9] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmCommands.cxx
[ 1938] -auxbase-strip CMakeFiles/CMakeLib.dir/cmCommands.cxx.o
[ 1970] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmAddCompileDefinitionsCommand.cxx
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CMakeFiles/CMakeLib.dir/cmAddCompileDefinitionsCommand.cxx.o
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CMakeFiles/CMakeLib.dir/cmAddCompileOptionsCommand.cxx.o
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CMakeFiles/CMakeLib.dir/cmAddCustomTargetCommand.cxx.o
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CMakeFiles/CMakeLib.dir/cmAddDependenciesCommand.cxx.o
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CMakeFiles/CMakeLib.dir/cmAddSubDirectoryCommand.cxx.o
[ 1fce] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmAddTestCommand.cxx
[ 2023] -auxbase-strip CMakeFiles/CMakeLib.dir/cmAddTestCommand.cxx.o
[ 2061] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmAuxSourceDirectoryCommand.cxx
[ 20c1] -auxbase-strip
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[ 210a] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmBreakCommand.cxx
[ 215d] -auxbase-strip CMakeFiles/CMakeLib.dir/cmBreakCommand.cxx.o
[ 2199] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmBuildCommand.cxx
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[ 2641] -auxbase-strip CMakeFiles/CMakeLib.dir/cmCreateTestSourceList.cxx.o
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[ 2866] /var/tmp/portage/dev-util/cmake-3.17.3/work/cmake-3.17.3/Source/cmExecProgramCommand.cxx
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kyle.edwards · June 3, 2020, 8:52pm

OK, I’ve tried to reproduce this in a Docker container but I’m not very familiar with Gentoo. I ran:

$ docker pull gentoo/stage3-amd64
$ docker run -it --rm gentoo/stage3-amd64
 $ emerge --sync
 $ emerge cmake
 $ cmake

and I did not see any segfaults. I’m guessing I need to provide some build flags. What other steps are necessary to reproduce this?

tedheadster · June 3, 2020, 9:04pm

I would first run the 32-bit version, since that is what I am using.

Matthew

tedheadster · June 3, 2020, 9:06pm

With my situation, you should be able to do something as simple as:

$ docker pull gentoo/stage3-x86
$ docker run -it --rm gentoo/stage3-x86
$ /usr/bin/cmake --version

Matthew

kyle.edwards · June 4, 2020, 1:35pm

OK, I tried again:

$ docker pull gentoo/stage3-x86
$ docker run -it --rm gentoo/stage3-x86
 $ emerge --sync
 $ emerge cmake
 $ cmake

and I still didn’t see any segfaults. What build flags did you use?

tedheadster · June 4, 2020, 2:22pm

I am rebuilding right now to optimize for debugging (-Og).

I can put a tarfile of the build tree onto Google Drive and share it with you. Shall I do that?

Matthew

(Attachment cmake is missing)

tedheadster · June 4, 2020, 4:08pm

I figured most of this out.

The problem is in Source/cmakemain.cxx where it does not check for a returned error code from uv_default_loop().

uv_default_loop() returns an error code and the ‘uv_loop_t* loop’ parameter to uv_loop_close() is still set to NULL.

705 int ret = do_cmake(ac, av);
706 #ifndef CMAKE_BOOTSTRAP
707 cmDynamicLoader::FlushCache();
708 #endif
709 uv_loop_close(uv_default_loop()); <---- no error code checking
710 return ret;
711 }

uv_default_loop() calls up_loop_init().

In uv_loop_init() (libuv-1.37.0/src/unix/loop.c) line 88 it gets an error (-38) and it jumps to the fail_async_init() error handler:

88 err = uv_async_init(loop, &loop->wq_async, uv__work_done);

89 if (err) <---- An error is returned
90 goto fail_async_init; <---- Jump to error handler
91
(gdb) next
89 if (err)
(gdb) print err
$24 = -38

I believe a patch checking the return code of uv_default_loop() would be helpful. I’ll investigate why uv_async_init() is getting a --38 return code.

Matthew